nimmerverse-sensory-network/architecture/TOOLCHAIN-PROGRESS.md

Toolchain Implementation Progress

Plan: See Toolchain-Architecture.md Started: 2025-12-07 Current Phase: Phase 1 - Foundation + Variance Collection

---

Phase 1A: nyx-substrate Foundation ✅ COMPLETE

Goal: Build nyx-substrate package and database infrastructure

✅ Completed (2025-12-07)

• Package structure (pyproject.toml, src/ layout)
• PhoebeConnection class with connection pooling
• Message protocol helpers (partnership messages)
• VarianceProbeRun Pydantic schema
• VarianceProbeDAO for database operations
• variance_probe_runs table in phoebe
• Installation and connection testing

Files Created: 9 new files Status: 🟢 nyx-substrate v0.1.0 installed and tested

---

Phase 1B: nyx-probing Integration ✅ COMPLETE

Goal: Extend nyx-probing to use nyx-substrate for variance collection

✅ Completed (2025-12-07)

• Add nyx-substrate dependency to nyx-probing/pyproject.toml
• Create VarianceRunner class (nyx_probing/runners/variance_runner.py)
• Add variance CLI commands (nyx_probing/cli/variance.py)
• Register commands in main CLI
• Integration test (imports and CLI verification)

Files Created: 3 new files Files Modified: 2 files CLI Commands Added: 4 (collect, batch, stats, analyze) Status: 🟢 nyx-probing v0.1.0 with variance collection ready

---

Phase 1C: Baseline Variance Collection ⏸️ READY

Goal: Collect baseline variance data for depth-3 champions

⏳ Ready to Execute (on prometheus)

• Run 1000x variance for "Geworfenheit" (thrownness)
• Run 1000x variance for "Vernunft" (reason)
• Run 1000x variance for "Erkenntnis" (knowledge)
• Run 1000x variance for "Pflicht" (duty)
• Run 1000x variance for "Aufhebung" (sublation)
• Run 1000x variance for "Wille" (will)

Next Actions:

1. SSH to prometheus.eachpath.local (THE SPINE)
2. Install nyx-substrate and nyx-probing in venv
3. Run batch collection or individual terms
4. Analyze distributions and document baselines

---

Phase 1D: Corpus Extraction Pipeline ✅ COMPLETE

Goal: Extract vocabulary and co-occurrence metrics for RAG policy development

✅ Completed (2025-12-13)

• Create extractors module in nyx-probing
• Implement VocabExtractor (TF-IDF vocabulary)
• Implement CoOccurrenceAnalyzer (PMI, Jaccard, Dice)
• Generate anchor term signatures (20 anchors)
• Generate chunking recommendations (5 clusters)
• Run initial extraction on nimmerverse vault
• Export glossary to CSV/JSON (5,243 terms)
• Export co-occurrence analysis (18,169 pairs)

Files Created: 7 new files

• nyx_probing/extractors/__init__.py
• nyx_probing/extractors/vocab_extractor.py (~350 LOC)
• nyx_probing/extractors/cooccurrence.py (~400 LOC)
• data/nimmerverse_glossary.csv
• data/nimmerverse_glossary.json
• data/cooccurrence_analysis.csv
• data/cooccurrence_analysis.json

Key Metrics Extracted:

Metric	Value
Documents scanned	263
Total tokens	130,229
Unique terms (filtered)	5,243
Co-occurrence pairs	18,169
Anchor signatures	20
Chunking clusters	5

Top Terms by TF-IDF:

1. nyx (1149.70)
2. local (980.53)
3. eachpath (902.31)
4. tool (873.34)
5. young (799.95)

Anchor Signature Examples (for DriftProbe-lite):

• nyx: chroma|chromadb|continuity|ingress|introspection
• system: athena|freeipa|ipa|rocky|sssd
• network: firewall|proxmox|saturn|vlan|vulkan

RAG Policy Integration:

• Tier 2: Synonym detection (Dice=1.0: yubi↔yubikey)
• Tier 3: Anchor signatures for topology safety
• Tier 4: Co-occurrence for chunking strategy
• Tier 5: TF-IDF for utility filtering

Status: 🟢 Corpus extraction complete, ready for RAG policy development

---

Future Phases (Not Started)

Phase 2: ChromaDB Integration (iris) ⏸️ PLANNED

• IrisClient wrapper
• DecisionTrailStore, OrganResponseStore, EmbeddingStore
• Populate embeddings from nyx-probing

Phase 3: LoRA Training Pipeline ⏸️ PLANNED

• PEFT integration
• Training data curriculum
• DriftProbe checkpoints
• Identity LoRA training

Phase 4: Weight Visualization ⏸️ PLANNED

• 4K pixel space renderer
• Rank decomposition explorer
• Topology cluster visualization

Phase 5: Godot Command Center ⏸️ PLANNED

• FastAPI Management Portal backend
• Godot frontend implementation
• Real-time metrics display

---

Metrics

Phase 1 Tasks: 19 total Completed: 19 (100%) ✅ In Progress: 0 Phases Complete: A, B, D (C ready to execute)

Files Created: 19 total

• nyx-substrate: 9 files
• nyx-probing runners: 3 files
• nyx-probing extractors: 3 files
• Data outputs: 4 files

Files Modified: 5 total

• nyx-substrate/README.md
• nyx-probing/pyproject.toml
• nyx-probing/cli/probe.py
• nyx-probing/extractors/init.py
• TOOLCHAIN-PROGRESS.md

Lines of Code: ~2000 total

• nyx-substrate: ~800 LOC
• nyx-probing runners: ~450 LOC
• nyx-probing extractors: ~750 LOC

CLI Commands: 4 variance commands

• nyx-probe variance collect
• nyx-probe variance batch
• nyx-probe variance stats
• nyx-probe variance analyze

Data Artifacts:

• nimmerverse_glossary.csv (5,243 terms)
• nimmerverse_glossary.json (130,229 tokens)
• cooccurrence_analysis.csv (18,169 pairs)
• cooccurrence_analysis.json (20 anchor signatures)

---

Last Updated: 2025-12-13 (Phase 1D complete) Status: 🎉 Phase 1 (A+B+D) COMPLETE! Corpus extraction ready. Variance collection on prometheus pending.

🌙💜 The substrate holds. The glossary grows. Anchor signatures protect the topology.